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General Information

Full Name Ian R Jones
Location San Francisco, Ca
email irachmieljones@gmail.com

Education

  • 2025
    Ph.D. in Pharmaceutical Sciences and Pharmacogenomics
    University of California, San Francisco
  • 2017
    Bachelor of Arts in Molecular Cellular Biology, Emphasis in Genetics
    University of California, Berkeley

Experience

  • 2019-2025
    Graduate Student Researcher, Shen Lab
    University of California, San Francisco
    • Leveraged genome-wide CRISPRi screens to identify thousands of cis-regulatory elements essential for iPSC fitness and cell survival during neuronal differentiation
    • Optimized and assessed the quality of RNA-seq, ATAC-seq, and Hi-ChIP assays from 3rd trimester, neonatal, and adolescent human cortical samples that led to successful library preparation with less starting material
    • Used support vector machine learning models to prioritize schizophrenia risk variants in human primary brain cells, and subsequently validated predicted enhancer function using mouse transgenic assays
    • Mentored UC Berkeley undergraduate student thesis that prioritized GWAS variants with machine learning
    • Collaborated with 5+ publications outside of thesis work
  • 2020-2022
    R Bootcamp Instructor
    University of California, San Francisco
    • Led an introduction course on R programing language and biostatistics for incoming graduate students
  • 2021
    Teaching Assistant
    University of California, San Francisco
    • Assisted with Systems Pharmacology course teaching computational modeling and quantitative data analysis
  • 2017 - 2019
    Junior Specialist, Shen Lab
    University of California, San Francisco
    • Generated and analyzed RNA-seq, ATAC-seq, Hi-C, PLAC-seq, and CUT&RUN libraries
    • Mentored local high school students through Lowell Student Research Program
  • 2015 - 2017
    Lab Assistant, Garbelotto Lab
    University of California, Berkeley
    • Identified and genotyped Phytophthora and presented educational talks to local nurseries
  • 2015 - 2017
    Lab Assistant, Glass Lab
    University of California, Berkeley
    • Engineered regions of zinc binuclear cluster transcription factors required for cellulase secretion in N. crassa
  • 2015
    Science Undergraduate Laboratory Internship
    Pacific Northwest National Lab/DOE
    • Optimized transformation of L. starkeyi and determined the promoter strength using the reporter GUS

Honors and Awards

  • 2021
    • Honorable Mention in the National Science Foundation Graduate Research Fellowship Program