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General Information
| Full Name | Ian R Jones |
| Location | San Francisco, Ca |
| irachmieljones@gmail.com |
Education
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2025 Ph.D. in Pharmaceutical Sciences and Pharmacogenomics
University of California, San Francisco -
2017 Bachelor of Arts in Molecular Cellular Biology, Emphasis in Genetics
University of California, Berkeley
Experience
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2019-2025 Graduate Student Researcher, Shen Lab
University of California, San Francisco - Leveraged genome-wide CRISPRi screens to identify thousands of cis-regulatory elements essential for iPSC fitness and cell survival during neuronal differentiation
- Optimized and assessed the quality of RNA-seq, ATAC-seq, and Hi-ChIP assays from 3rd trimester, neonatal, and adolescent human cortical samples that led to successful library preparation with less starting material
- Used support vector machine learning models to prioritize schizophrenia risk variants in human primary brain cells, and subsequently validated predicted enhancer function using mouse transgenic assays
- Mentored UC Berkeley undergraduate student thesis that prioritized GWAS variants with machine learning
- Collaborated with 5+ publications outside of thesis work
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2020-2022 R Bootcamp Instructor
University of California, San Francisco - Led an introduction course on R programing language and biostatistics for incoming graduate students
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2021 Teaching Assistant
University of California, San Francisco - Assisted with Systems Pharmacology course teaching computational modeling and quantitative data analysis
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2017 - 2019 Junior Specialist, Shen Lab
University of California, San Francisco - Generated and analyzed RNA-seq, ATAC-seq, Hi-C, PLAC-seq, and CUT&RUN libraries
- Mentored local high school students through Lowell Student Research Program
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2015 - 2017 Lab Assistant, Garbelotto Lab
University of California, Berkeley - Identified and genotyped Phytophthora and presented educational talks to local nurseries
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2015 - 2017 Lab Assistant, Glass Lab
University of California, Berkeley - Engineered regions of zinc binuclear cluster transcription factors required for cellulase secretion in N. crassa
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2015 Science Undergraduate Laboratory Internship
Pacific Northwest National Lab/DOE - Optimized transformation of L. starkeyi and determined the promoter strength using the reporter GUS
Presentations
Honors and Awards
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2021 - Honorable Mention in the National Science Foundation Graduate Research Fellowship Program